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1.

A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors.

Venkataraman, Anand; Yang, Kun; Irizarry, Jose; Mackiewicz, Mark; Mita, Paolo; Kuang, Zheng; Xue, Lin; Ghosh, Devlina; Liu, Shuang; Ramos, Pedro; Hu, Shaohui; Bayron Kain, Diane; Keegan, Sarah; Saul, Richard; Colantonio, Simona; Zhang, Hongyan; Behn, Florencia Pauli; Song, Guang; Albino, Edisa; Asencio, Lillyann; Ramos, Leonardo; Lugo, Luvir; Morell, Gloriner; Rivera, Javier; Ruiz, Kimberly; Almodovar, Ruth; Nazario, Luis; Murphy, Keven; Vargas, Ivan; Rivera-Pacheco, Zully Ann; Rosa, Christian; Vargas, Moises; McDade, Jessica; Clark, Brian S; Yoo, Sooyeon; Khambadkone, Seva G; de Melo, Jimmy; Stevanovic, Milanka; Jiang, Lizhi; Li, Yana; Yap, Wendy Y; Jones, Brittany; Tandon, Atul; Campbell, Elliot; Montelione, Gaetano T; Anderson, Stephen; Myers, Richard M; Boeke, Jef D; Fenyö, David; Whiteley, Gordon.

Nat Methods; 15(5): 330-338, 2018 05.

Artículo en Inglés | MEDLINE | ID: mdl-29638227

2.

Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.

Ntai, Ioanna; Fornelli, Luca; DeHart, Caroline J; Hutton, Josiah E; Doubleday, Peter F; LeDuc, Richard D; van Nispen, Alexandra J; Fellers, Ryan T; Whiteley, Gordon; Boja, Emily S; Rodriguez, Henry; Kelleher, Neil L.

Proc Natl Acad Sci U S A; 115(16): 4140-4145, 2018 04 17.

Artículo en Inglés | MEDLINE | ID: mdl-29610327

3.

Comparison of Eight Technologies to Determine Genotype at the UGT1A1 (TA)_n Repeat Polymorphism: Potential Clinical Consequences of Genotyping Errors?

Sissung, Tristan M; Barbier, Roberto H; Price, Douglas K; Plona, Teri M; Pike, Kristen M; Mellott, Stephanie D; Baugher, Ryan N; Whiteley, Gordon R; Soppet, Daniel R; Venzon, David; Berman, Arlene; Rajan, Arun; Giaccone, Giuseppe; Meltzer, Paul; Figg, William D.

Int J Mol Sci; 21(3)2020 Jan 30.

Artículo en Inglés | MEDLINE | ID: mdl-32019188

4.

Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics.

Clark, David J; Hu, Yingwei; Bocik, William; Chen, Lijun; Schnaubelt, Michael; Roberts, Rhonda; Shah, Punit; Whiteley, Gordon; Zhang, Hui.

J Proteome Res; 17(6): 2205-2215, 2018 06 01.

Artículo en Inglés | MEDLINE | ID: mdl-29718670

5.

Anti-peptide monoclonal antibodies generated for immuno-multiple reaction monitoring-mass spectrometry assays have a high probability of supporting Western blot and ELISA.

Schoenherr, Regine M; Saul, Richard G; Whiteaker, Jeffrey R; Yan, Ping; Whiteley, Gordon R; Paulovich, Amanda G.

Mol Cell Proteomics; 14(2): 382-98, 2015 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-25512614

6.

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.

Hoofnagle, Andrew N; Whiteaker, Jeffrey R; Carr, Steven A; Kuhn, Eric; Liu, Tao; Massoni, Sam A; Thomas, Stefani N; Townsend, R Reid; Zimmerman, Lisa J; Boja, Emily; Chen, Jing; Crimmins, Daniel L; Davies, Sherri R; Gao, Yuqian; Hiltke, Tara R; Ketchum, Karen A; Kinsinger, Christopher R; Mesri, Mehdi; Meyer, Matthew R; Qian, Wei-Jun; Schoenherr, Regine M; Scott, Mitchell G; Shi, Tujin; Whiteley, Gordon R; Wrobel, John A; Wu, Chaochao; Ackermann, Brad L; Aebersold, Ruedi; Barnidge, David R; Bunk, David M; Clarke, Nigel; Fishman, Jordan B; Grant, Russ P; Kusebauch, Ulrike; Kushnir, Mark M; Lowenthal, Mark S; Moritz, Robert L; Neubert, Hendrik; Patterson, Scott D; Rockwood, Alan L; Rogers, John; Singh, Ravinder J; Van Eyk, Jennifer E; Wong, Steven H; Zhang, Shucha; Chan, Daniel W; Chen, Xian; Ellis, Matthew J; Liebler, Daniel C; Rodland, Karin D.

Clin Chem; 62(1): 48-69, 2016 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-26719571

7.

Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.

Carr, Steven A; Abbatiello, Susan E; Ackermann, Bradley L; Borchers, Christoph; Domon, Bruno; Deutsch, Eric W; Grant, Russell P; Hoofnagle, Andrew N; Hüttenhain, Ruth; Koomen, John M; Liebler, Daniel C; Liu, Tao; MacLean, Brendan; Mani, D R; Mansfield, Elizabeth; Neubert, Hendrik; Paulovich, Amanda G; Reiter, Lukas; Vitek, Olga; Aebersold, Ruedi; Anderson, Leigh; Bethem, Robert; Blonder, Josip; Boja, Emily; Botelho, Julianne; Boyne, Michael; Bradshaw, Ralph A; Burlingame, Alma L; Chan, Daniel; Keshishian, Hasmik; Kuhn, Eric; Kinsinger, Christopher; Lee, Jerry S H; Lee, Sang-Won; Moritz, Robert; Oses-Prieto, Juan; Rifai, Nader; Ritchie, James; Rodriguez, Henry; Srinivas, Pothur R; Townsend, R Reid; Van Eyk, Jennifer; Whiteley, Gordon; Wiita, Arun; Weintraub, Susan.

Mol Cell Proteomics; 13(3): 907-17, 2014 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-24443746

8.

Targeted mass spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP Kinase, and AKT signaling.

Whiteaker, Jeffrey R; Sharma, Kanika; Hoffman, Melissa A; Kuhn, Eric; Zhao, Lei; Cocco, Alexandra R; Schoenherr, Regine M; Kennedy, Jacob J; Voytovich, Ulianna; Lin, Chenwei; Fang, Bin; Bowers, Kiah; Whiteley, Gordon; Colantonio, Simona; Bocik, William; Roberts, Rhonda; Hiltke, Tara; Boja, Emily; Rodriguez, Henry; McCormick, Frank; Holderfield, Matthew; Carr, Steven A; Koomen, John M; Paulovich, Amanda G.

Cell Rep Methods; 1(3)2021 07 26.

Artículo en Inglés | MEDLINE | ID: mdl-34671754

9.

A dataset describing a suite of novel antibody reagents for the RAS signaling network.

Schoenherr, Regine M; Huang, Dongqing; Voytovich, Uliana J; Ivey, Richard G; Kennedy, Jacob J; Saul, Richard G; Colantonio, Simona; Roberts, Rhonda R; Knotts, Joseph G; Kaczmarczyk, Jan A; Perry, Candice; Hewitt, Stephen M; Bocik, William; Whiteley, Gordon R; Hiltke, Tara; Boja, Emily S; Rodriguez, Henry; Whiteaker, Jeffrey R; Paulovich, Amanda G.

Sci Data; 6(1): 160, 2019 08 29.

Artículo en Inglés | MEDLINE | ID: mdl-31467290

10.

Discovering clinical biomarkers of ionizing radiation exposure with serum proteomic analysis.

Ménard, Cynthia; Johann, Donald; Lowenthal, Mark; Muanza, Thierry; Sproull, Mary; Ross, Sally; Gulley, James; Petricoin, Emanuel; Coleman, C Norman; Whiteley, Gordon; Liotta, Lance; Camphausen, Kevin.

Cancer Res; 66(3): 1844-50, 2006 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-16452246

11.

Targeting RAS-driven human cancer cells with antibodies to upregulated and essential cell-surface proteins.

Martinko, Alexander J; Truillet, Charles; Julien, Olivier; Diaz, Juan E; Horlbeck, Max A; Whiteley, Gordon; Blonder, Josip; Weissman, Jonathan S; Bandyopadhyay, Sourav; Evans, Michael J; Wells, James A.

Elife; 72018 01 23.

Artículo en Inglés | MEDLINE | ID: mdl-29359686

12.

Direct molecular dissection of tumor parenchyma from tumor stroma in tumor xenograft using mass spectrometry-based glycoproteomics.

Ye, Xiaoying; Luke, Brian T; Wei, Bih-Rong; Kaczmarczyk, Jan A; Loncarek, Jadranka; Dwyer, Jennifer E; Johann, Donald J; Saul, Richard G; Nissley, Dwight V; McCormick, Frank; Whiteley, Gordon R; Blonder, Josip.

Oncotarget; 9(41): 26431-26452, 2018 May 29.

Artículo en Inglés | MEDLINE | ID: mdl-29899869

13.

A Multiplexed Mass Spectrometry-Based Assay for Robust Quantification of Phosphosignaling in Response to DNA Damage.

Whiteaker, Jeffrey R; Zhao, Lei; Saul, Rick; Kaczmarczyk, Jan A; Schoenherr, Regine M; Moore, Heather D; Jones-Weinert, Corey; Ivey, Richard G; Lin, Chenwei; Hiltke, Tara; Reding, Kerryn W; Whiteley, Gordon; Wang, Pei; Paulovich, Amanda G.

Radiat Res; 189(5): 505-518, 2018 05.

Artículo en Inglés | MEDLINE | ID: mdl-29474155

14.

Novel antibody reagents for characterization of drug- and tumor microenvironment-induced changes in epithelial-mesenchymal transition and cancer stem cells.

Navas, Tony; Pfister, Thomas D; Colantonio, Simona; Aziz, Amina; Dieckman, Lynda; Saul, Richard G; Kaczmarczyk, Jan; Borgel, Suzanne; Alcoser, Sergio Y; Hollingshead, Melinda G; Lee, Young H; Bottaro, Donald P; Hiltke, Tara; Whiteley, Gordon; Takebe, Naoko; Kinders, Robert J; Parchment, Ralph E; Tomaszewski, Joseph E; Doroshow, James H.

PLoS One; 13(6): e0199361, 2018.

Artículo en Inglés | MEDLINE | ID: mdl-29928062

15.

A robust biomarker discovery pipeline for high-performance mass spectrometry data.

Fisher, Wayne G; Rosenblatt, Kevin P; Fishman, David A; Whiteley, Gordon R; Mikulskis, Alvydas; Kuzdzal, Scott A; Lopez, Mary F; Tan, Niclas Chiang; German, Dwight C; Garner, Harold R.

J Bioinform Comput Biol; 5(5): 1023-45, 2007 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-17933009

16.

Proteomics as a tool for biomarker discovery.

Kohn, Elise C; Azad, Nilofer; Annunziata, Christina; Dhamoon, Amit S; Whiteley, Gordon.

Dis Markers; 23(5-6): 411-7, 2007.

Artículo en Inglés | MEDLINE | ID: mdl-18057524

17.

Accurate diagnosis of acute graft-versus-host disease using serum proteomic pattern analysis.

Srinivasan, Ramaprasad; Daniels, Jasmine; Fusaro, Vincent; Lundqvist, Andreas; Killian, Jonathan K; Geho, David; Quezado, Martha; Kleiner, David; Rucker, Sally; Espina, Virginia; Whiteley, Gordon; Liotta, Lance; Petricoin, Emmanuel; Pittaluga, Stefania; Hitt, Ben; Barrett, A J; Rosenblatt, Kevin; Childs, Richard W.

Exp Hematol; 34(6): 796-801, 2006 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-16728285

18.

Evaluation of the selectivity and sensitivity of isoform- and mutation-specific RAS antibodies.

Waters, Andrew M; Ozkan-Dagliyan, Irem; Vaseva, Angelina V; Fer, Nicole; Strathern, Leslie A; Hobbs, G Aaron; Tessier-Cloutier, Basile; Gillette, William K; Bagni, Rachel; Whiteley, Gordon R; Hartley, James L; McCormick, Frank; Cox, Adrienne D; Houghton, Peter J; Huntsman, David G; Philips, Mark R; Der, Channing J.

Sci Signal; 10(498)2017 Sep 26.

Artículo en Inglés | MEDLINE | ID: mdl-28951536

19.

SELDI-TOF plasma profiles distinguish individuals in a protein C-deficient family with thrombotic episodes occurring before age 40.

Svensson, Annika M; Whiteley, Gordon R; Callas, Peter W; Bovill, Edwin G.

Thromb Haemost; 96(6): 725-30, 2006 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-17139365

20.

Proteomic patterns for cancer diagnosis--promise and challenges.

Whiteley, Gordon R.

Mol Biosyst; 2(8): 358-63, 2006 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-16880955

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